Convert count or frequency matrices separated by empty lines into MEME motifs.
Reads matrices from standard input separated by empty lines.
Example DNA count matrix:
1 5 6 3 5 5 5 0 12 1 1 1
The motifs are named based on their order in the file but their consensus sequence is used as the alternate name.
|-dna||Use the DNA alphabet. Note that this is actually the default.||The DNA alphabet is used.|
|-protein||Use the protein alphabet.||The DNA alphabet is used.|
|-alph||alphabet file||Use the alphabet defined in the file.||The DNA alphabet is used.|
|-orien||auto|col|row||Set the matrix orientation.||The matrix orientation is automatically detected.|
|-numseqs||count||Assume frequences based on count sequence sites.||The motif is created as if it was made from 20 sequence sites.|