List only potential regulatory links that meet the selected filter criteria below.
Sort the potential regulatory links according to the criterion selected in the menu below. Sorting is applied after filtering where possible (the exception being the "Top" filter) so the filters applied will affect the sort.
For further information on how to interpret these results please access http://localhost:8080/meme_5.0.4/doc/cismapper-output-format.html. To get a copy of the MEME software please access http://meme-suite.org.
If you use CisMapper in your research, please cite the following paper:
Timothy O'Connor, Mikael Bodén, Timothy L. Bailey, "CisMapper: Predicting regulatory interactions from transcription factor ChIP-seq data", Nucleic Acids Research, 45:e19, 2017. [Abstract and Full Text]
|Potential Regulatory Links||Program information||Gene Targets in TSV Format||Gene Elements in TSV Format||Links in TSV Format|
|Gene ID||Gene Name||TSS ID||TSS Locus||Strand||RE Locus||Distance||Histone||Correlation||Corr.
|Score||RE Score||Best RE?||TSS Score||Best TSS?||Gene Score||RE Loci per TSS||TSSes per Gene|
|File Name||File Type||Number of TSSes with Links||Number of Genes with Links|
|Maximum Link Distances|
|Expression File Type|
|Minimum Feature Count|
|Minimum Maximum Expression|
|Maximum HTML Score|